PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00383.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15356.9 Da    PI: 11.6211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00383.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.71e-2586136151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k+ien + rqvtfskRr+g++ KA+EL vLCda+v v++fsstg+ly+yss
  Zpz_sc00383.1.g00040.1.am.mk  86 KKIENITSRQVTFSKRRTGLFNKAKELAVLCDAQVGVLVFSSTGRLYDYSS 136
                                   68***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.24578138IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-3578137IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-2478137IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-2580100IPR002100Transcription factor, MADS-box
CDDcd002655.51E-3380137No hitNo description
PfamPF003192.4E-2487134IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-25100115IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-25115136IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MTIKKTGTCQ LDFVPIGPTH ANADAMHAKV WLRAEQNKSR LDSLLAARLA RRLARSADQP  60
PASRFVRKQI KSFATGAMVR GKTVMKKIEN ITSRQVTFSK RRTGLFNKAK ELAVLCDAQV  120
GVLVFSSTGR LYDYSSTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-28AGAMOUS-like 71